Multilocus sequence typing as a replacement for serotyping in Salmonella enterica, PLoS Pathog, vol.8, p.1002776, 2012. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01117433
The application of food safety interventions in primary production of beef and lamb: a review, Int. J. Food Microbiol, vol.141, pp.43-52, 2010. ,
Prevalence and characterization of Salmonella among humans in Ghana, Trop. Med. and Health, vol.45, p.3, 2017. ,
Global burden of invasive nontyphoidal Salmonella disease, Emerg. Infect. Dis, vol.21, pp.941-949, 2010. ,
, , 2006.
, Co-selection of antibiotic and metal resistance, Trends Microbiol, vol.14, pp.176-182
Prevalence of Salmonella enterica in poultry and eggs in Uruguay during an epidemic due to Salmonella enterica serovar Enteritidis, J. Clin. Microbiol, vol.48, pp.2413-2423, 2010. ,
Antimicrobial resistance and virulence determinants in European Salmonella genomic island 1-positive Salmonella enterica isolates from different origins, Appl. Environ. Microbiol, vol.77, pp.5655-5664, 2011. ,
Salmonella in the pork production chain and its impact on human health in the European Union, Epidemiol. Infect, vol.145, pp.1513-1526, 2017. ,
Phenotypic and molecular typing of Salmonella strains reveals different contamination sources in two commercial pig slaughterhouses, Appl. Environ. Microbiol, vol.70, pp.5305-5314, 2004. ,
Phenotypic characteristics and genotypic correlation between Salmonella isolates from a slaughterhouse and retail markets in Yangzhou, China. Int. J. Food Microbiol, vol.222, pp.56-64, 2016. ,
, National Enteric Disease Surveillance: Salmonella Annual Report, CDC, 2017.
Survival of artificially inoculated Escherichia coli and Salmonella Typhimurium on the surface of raw poultry products subjected to crust freezing, Poult. Sci, vol.90, pp.2874-2878, 2011. ,
Characterization of Salmonella enterica isolates from infants and toddlers in Wuhan, China. J. Antimicrob. Chemother, vol.63, pp.87-94, 2009. ,
Structure of the French farm-to-table surveillance system for Salmonella, Revue Méd. Vétér, vol.162, pp.489-500, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00653472
Antibiotic resistance in Salmonella from retail foods of animal origin and its association with disinfectant and heavy metal resistance, Microb. Drug Resist, vol.24, pp.782-791, 2017. ,
Bilan 2014 des plans de surveillance et de contrôle, Surveillance Sanitaire des Denrées Animales et Végétales en France, pp.69-74, 2014. ,
Bilan 2015 des plans de surveillance et de contrôle, Surveillance Sanitaire des Denrées Animales et Végétales en France, pp.112-125, 2015. ,
The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-Borne Outbreaks in 2017, Parma: EFSA, 2018. ,
, Report of the task force on zoonoses data collection on the analysis of the baseline survey on the prevalence of Salmonella in slaughter pigs, in the EU, 2006-2007 -Part A: Salmonella prevalence estimates, EFSA J, vol.6, p.135, 2008.
, Analysis of the baseline survey on the prevalence of Salmonella in holdings with breeding pigs in the EU, 2008 -Part A: Salmonella prevalence estimates, EFSA J, vol.7, p.1377, 2009.
, The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2014, EFSA J, vol.13, p.4329, 2015.
, The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2015, EFSA J, vol.14, p.4634, 2016.
, The European Union summary report on trends and sources of zoonoses, zoonotic agents and food?borne outbreaks in 2016, EFSA J, vol.15, p.5077, 2017.
Invasive non-typhoidal Salmonella disease: an emerging and neglected tropical disease in Africa, Lancet, vol.379, issue.11, pp.61752-61754, 2012. ,
First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian-and avian-hosts, BMC Microbiol, vol.17, p.222, 2017. ,
, , 2017.
, Occurrence, characterization, and antimicrobial susceptibility of Salmonella enterica in slaughtered pigs in sardinia, J. Food Sci, vol.82, pp.969-976
Observations on the distribution and persistence of monophasic Salmonella Typhimurium on infected pig and cattle farms, Vet. Microbiol, vol.227, pp.90-96, 2018. ,
Antigenic formulae of the Salmonella serovars, WHO collaborating center for reference and research on Salmonella, 2007. ,
Diversity of Salmonella enterica serovar Derby isolated from pig, pork and humans in Germany, Int. J. Food Microbiol, vol.151, pp.141-149, 2011. ,
Population structure and associated phenotypes of Salmonella enterica serovars Derby and Mbandaka overlap with host range, BMC Microbiol, vol.16, p.15, 2016. ,
Étude de la Distribution de Salmonella Comme un, 2014. ,
, , 2016.
, Nontyphoidal Salmonella Infection, vol.22, pp.726-729, 2012.
, Le Porc par les Chiffres, IFIP, 2014.
Genetic diversity and antimicrobial resistance profiles of Salmonella enterica serotype Derby isolated from pigs, pork, and humans in France, Foodborne Pathog. Dis, vol.10, pp.977-984, 2013. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01109828
Le réseau Salmonella, un dispositif de surveillance des salmonelles sur la chaîne alimentaire: bilan, Bull. Epidémiol. Santé Anim. Aliment, vol.77, pp.75-81, 2015. ,
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees, Nucleic Acids Res, vol.44, pp.242-245, 2016. ,
La Filière Volaille de Chair, Rapport CGAAER, 2014. ,
Conditions for the Effectiveness of a Preliminary Test of Variance, Am. Stat, vol.44, pp.322-326, 1990. ,
The genome analysis toolkit: a mapreduce framework for analyzing next-generation DNA sequencing data, Genome Res, vol.20, pp.1297-1303, 2010. ,
Suivi des Ventes de Médicaments Vétérinaires Contenant des Antibiotiques en France en, 2015. ,
Bilan Diagnostic des Bassins de Production de Volailles de Chair, 2015. ,
INTEGRALL: a database and search engine for integrons, integrases and gene cassettes, Bioinform, vol.25, pp.1096-1098, 2009. ,
Source attribution of foodborne diseases: potentialities, hurdles, and future expectations, Front. Microbiol, vol.9, 1983. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02586205
Critical orientation in the jungle of currently available methods and types of data for source attribution of foodborne diseases, Front. Microbiol, vol.10, p.2578, 2019. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02586215
An outbreak of gastro-enteritis due to Salmonella Derby, J. Hyg, vol.46, pp.151-157, 1948. ,
Food-borne diseases -the challenges of 20 years ago still persist while new ones continue to emerge, Int. J. Food Microbiol, p.139, 2010. ,
,
Cooccurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential, BMC Genomics, vol.16, p.964, 2015. ,
Microevolution of monophasic Salmonella typhimurium during epidemic, Emerg. Infect. Dis, vol.22, pp.617-624, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-01602815
Laboratorybased surveillance of nontyphoidal Salmonella infections in China, Foodborne Pathog. Dis, vol.8, pp.921-927, 2011. ,
First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar heidelberg isolated from broiler chickens, Antimicrob. Agents Chemother, vol.61, pp.410-417, 2017. ,
Preslaughter holding environment in pork plants is highly contaminated with Salmonella enterica, Appl. Environ. Microbiol, vol.69, pp.4489-4494, 2003. ,
Remark AS R94: a remark on algorithm AS 181: the w-test for normality, J. R. Stat. Soc. Series C (Appl. Statist.), vol.44, pp.547-551, 1995. ,
Cross-infection in hospital due to Salmonella Derby, J. Hyg, vol.46, pp.158-163, 1948. ,
Available options in the management of non-typhi Salmonella, Expert Opin. Pharmacother, vol.5, pp.1737-1743, 2004. ,
An outbreak of hospital-associated infections due to Salmonella Derby, JAMA, vol.186, pp.984-986, 1963. ,
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies, Mol. Biol. Evol, vol.32, pp.268-274, 2014. ,
Prevalence, Enumeration, Serotypes, and Antimicrobial Resistance Phenotypes of <span class="namedcontent genus-species" id="named-content-1">Salmonella enterica</span> Isolates from Carcasses at Two Large United States Pork Processing Plants, Appl. Environ. Microb, vol.78, pp.2716-2726, 2012. ,
Genetic diversity of Salmonella derby from the poultry sector in, Europe. Pathoges, vol.8, p.46, 2019. ,
Complete genome sequence of Salmonella enterica subsp. enterica serotype derby, associated with the pork sector in France, Microbiol. Resour. Announc, vol.7, pp.1027-1018, 2018. ,
Polyphyletic nature of Salmonella enterica serotype derby and lineagespecific host-association revealed by genome-wide analysis, Front. Microbiol, vol.9, p.891, 2018. ,
Evaluation of WGS based approaches for investigating a food-borne outbreak caused by Salmonella enterica serovar Derby in Germany, Food Microbiol, vol.71, pp.46-54, 2017. ,
Challenges to meat safety in the 21st century, Meat Sci, vol.78, pp.3-13, 2008. ,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinform, vol.30, pp.1312-1313, 2014. ,
Disentangling a complex nationwide Salmonella Dublin outbreak associated with raw-milk cheese consumption, Euro. Surveill, vol.24, p.1700703, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02005693
Salmonella Derby clonal spread from pork, Emerg. Infect. Dis, vol.11, pp.694-698, 2005. ,
Bilan des Activités 2013 du Centre National de Référence des Esherichia coli, Shigella et Salmonella [Online]. Centre National de Référence des Escherichia coli, Shigella et Salmonella. Available online at, vol.12, 2014. ,
Rapport d'activité annuel 2018 Centre National de Référencedes Escherichia coli, Shigella et Salmonella, Unité de Recherche et d'Expertise des Bactéries Pathogènes Entériques, 2018. ,
, Salmonella (non-typhoidal) -Fact sheet, WHO, 2018.
Identification of acquired antimicrobial resistance genes, J. Antimicrob. Chemother, vol.67, pp.2640-2644, 2012. ,
Subtyping Salmonella enterica serovar Derby with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs), Food Control, vol.73, pp.474-484, 2017. ,