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Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics

Arnaud Bridier 1, 2
1 MICALIS - MICrobiologie de l'ALImentation au Service de la Santé
2 Laboratoire de Fougères, Bâtiment Bioagropolis
Abstract : In this chapter, applications of shotgun metagenomics for taxonomic profiling and functional investigation of food microbial communities with a focus on antimicrobial resistance (AMR) were overviewed in the light of last data in the field. Potentialities of metagenomic approach, along with the challenges encountered for a wider and routinely use in food safety was discussed.
Keywords : metagenomic shotgun antimicrobial resistance bacteria microbiology food borne pathogen taxonomy antibiotic resistance
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https://hal-anses.archives-ouvertes.fr/anses-02158853
Contributor : Emmanuelle Chiffoleau <>
Submitted on : Tuesday, June 18, 2019 - 1:19:42 PM
Last modification on : Tuesday, March 17, 2020 - 2:49:35 AM

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  • HAL Id : anses-02158853, version 1
  • PUBMED : 30580413

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Arnaud Bridier. Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics. Foodborne Bacterial Pathogens: Methods and Protocols, Springer, pp.229-245, 2019, 978-1-4939-9000-9. ⟨anses-02158853⟩

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