Skip to Main content Skip to Navigation
Book sections

Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics

Arnaud Bridier 1, 2
1 MICALIS - MICrobiologie de l'ALImentation au Service de la Santé
2 Laboratoire de Fougères, Bâtiment Bioagropolis
Abstract : In this chapter, applications of shotgun metagenomics for taxonomic profiling and functional investigation of food microbial communities with a focus on antimicrobial resistance (AMR) were overviewed in the light of last data in the field. Potentialities of metagenomic approach, along with the challenges encountered for a wider and routinely use in food safety was discussed.
Keywords : metagenomic shotgun antimicrobial resistance bacteria microbiology food borne pathogen taxonomy antibiotic resistance
Document type :
Book sections
Complete list of metadata
https://hal-anses.archives-ouvertes.fr/anses-02158853
Contributor : Emmanuelle Chiffoleau Connect in order to contact the contributor
Submitted on : Tuesday, June 18, 2019 - 1:19:42 PM
Last modification on : Monday, October 11, 2021 - 11:24:10 AM

Identifiers

  • HAL Id : anses-02158853, version 1
  • PUBMED : 30580413

Collections

ANSES | INRA | AGROPARISTECH | INRAE | GS-BIOSPHERA | GS-HEALTH-DRUG-SCIENCES

Citation

Arnaud Bridier. Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics. Foodborne Bacterial Pathogens: Methods and Protocols, Springer, pp.229-245, 2019, 978-1-4939-9000-9. ⟨anses-02158853⟩

Export

BibTeX TEI DC DCterms EndNote

Share

Metrics

Record views

107