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Book Sections Year : 2019

Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics

Abstract

In this chapter, applications of shotgun metagenomics for taxonomic profiling and functional investigation of food microbial communities with a focus on antimicrobial resistance (AMR) were overviewed in the light of last data in the field. Potentialities of metagenomic approach, along with the challenges encountered for a wider and routinely use in food safety was discussed.
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Dates and versions

anses-02158853 , version 1 (18-06-2019)

Identifiers

  • HAL Id : anses-02158853 , version 1
  • PUBMED : 30580413

Cite

Arnaud Bridier. Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics. Foodborne Bacterial Pathogens: Methods and Protocols, Springer, pp.229-245, 2019, 978-1-4939-9000-9. ⟨anses-02158853⟩
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