Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

Patrick Munk , Berith Elkær Knudsen , Oksana Lukjancenko , Ana Sofia Ribeiro Duarte , Liese van Gompel , Roosmarijn Luiken , Lidwien A. M. Smit (1) , Heike Schmitt , Alejandro Dorado Garcia , Rasmus Borup Hansen , Thomas Nordahl Petersen , Alex Bossers (2) , Etienne Ruppé (3) , Haitske Graveland , Arno van den Essen , Gonzales-Zorn B , Iván Moyano Garcia , Pascal Sanders (4) , Claire Chauvin (5) , Julie David (5) , A. Battisti , A. Caprioli , J. Dewulf , T. Blaha , K. Wadepohl , M. Brandt , D. Wasyl , M. Skarzyńska , M. Zajac , H.W. Saatkamp , K.D.C. Stärk , Ole Lund (6) , Tine Hald , Sünje Johanna Pamp , Håkan Vigre , H. Daskalov , Dick Heederik (7) , Jaap Wagenaar , Dik Mevius , Frank Aarestrup

1 IRAS - Institute for Risk Assessment Sciences [Utrecht, The Netherlands]
2 Part of Wageningen UR
3 Genomic Research Laboratory [Geneva, Switzerland]
4 ANSES - Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail
5 Laboratoire de Ploufragan - Plouzané
6 Center for Biological Sequence Analysis
7 IRAS - Division of Occupational and Environmental Health, Institute for Risk Assessment

Keywords: microbiology; bacteria; pig; poultry; antibiotic resistance

Keywords: microbiologie; bactérie; feces; animal; résistane aux antibiotiques; proc; volaille; Europe

Domains: Life Sciences [q-bio]; Animal biology; Veterinary medicine and animal Health; Life Sciences [q-bio]; Microbiology and Parasitology

Patrick Munk, Berith Elkær Knudsen, Oksana Lukjancenko, Ana Sofia Ribeiro Duarte, Liese van Gompel, et al.. Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries. Nature Microbiology, 2018, 3 (8), pp.898 - 908. ⟨10.1038/s41564-018-0192-9⟩. ⟨anses-01873810⟩